PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01343g00152.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C3H
Protein Properties Length: 337aa    MW: 37919.2 Da    PI: 7.0172
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01343g00152.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.12.5e-12199224126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                               y   +C+++ +tG+C yGd+CkF+H+
  Peaxi162Scf01343g00152.1 199 YQPDICKDYKETGYCGYGDSCKFMHD 224
                               67789********************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.96E-9197229IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7198225IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878198226IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-10199224IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-12199229IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.101.6E-13267318IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139201.0E-8276318No hitNo description
SuperFamilySSF578502.09E-13276319No hitNo description
CDDcd001621.00E-8277318No hitNo description
PROSITE profilePS5008910.571277315IPR001841Zinc finger, RING-type
SMARTSM001841.7E-4277314IPR001841Zinc finger, RING-type
PROSITE patternPS005180292301IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MDNSNTISNA GDAEPEQPTT APPSVCNFFK KSSKGKNIRK RPTVEEGENE DAEGERSVIY  60
TKKKPAAGDN KLHFSTGPSK SNTPTESSVD SKATRFHFES SKEIQVQNDS RATATLETET  120
EFSKDARAIR ERALKLADEA LKGKSKTGGD EKLYKGMNQY TDYKAGLRRE HTISSEKAGG  180
AHGPLRASAH IRVSARFDYQ PDICKDYKET GYCGYGDSCK FMHDRGDYKS GWQLEREWDE  240
AEKARKRKLA MGMLEEDDED AEKSDEDDDD DALPFACFIC REPFVDPVMT KCKHYFCEHC  300
ALKHHAKNKK CFVCNQPTLG IFNTAFEIRK RMAAQGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2csy_A8e-212733361477Zinc finger protein 183-like 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006364817.10.0PREDICTED: zinc finger CCCH domain-containing protein 1
RefseqXP_015159622.10.0PREDICTED: zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-161C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLM1B2E50.0M1B2E5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000355220.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44032337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-158C3H family protein